// CLASSIFIED INSTITUTIONAL VERSION 0.3 · POST-BOOTSTRAP · <INSTITUTION REDACTED>

ANIMAL RESEARCH OPS STUDIO

An agentic multi-agent studio for ethical animal research at <Institutional Name Redacted>. Drafts, reviews, surfaces decisions. Humans approve.

  • 20Agents
  • 30Skills
  • 11Templates
  • 06Registries
  • 62Departments
  • 03Vivariums
SCROLL
01 //

DRAFTS, REVIEWS,
SURFACES DECISIONS.
HUMANS APPROVE.

A support tool for the people who do the work. Built to accelerate protocol development, IACUC compliance, vivarium operations, study design, data integrity, and reporting — without ever replacing veterinary, ethical, or scientific judgment.

02 //

THE THREE Rs

Russell & Burch, 1959. The ethical foundation of humane experimental technique. Mandatory in every protocol. Veto-enforced.

01

REPLACEMENT

ASKED FIRST, EVERY TIME.

Substitute non-animal alternatives whenever scientifically valid. In vitro systems, iPSC-derived models, organoids, organ-on-chip, computational models, less sentient species.

// PRIORITY 01NC3Rs · ECVAM · AltTox
02

REDUCTION

FEWER ANIMALS. BETTER SCIENCE.

Obtain the same or more information from fewer animals. Power analysis with stated effect-size sources. Factorial design. Repeated measures. Shared controls. Pre-registration. Allocation-aware.

// PRIORITY 02NC3Rs EDA · ARRIVE 2.0
03

REFINEMENT

DECREASE INCIDENCE. DECREASE SEVERITY.

Refine procedures, housing, handling, endpoints, and lifetime welfare. Species-appropriate enrichment. Multimodal analgesia. Objective humane endpoints. Refined techniques. Pediatric sensitivity windows.

// PRIORITY 03Guide 8e · AAALAC · AVMA 2020
03 //

THREE TIERS.
TWENTY AGENTS.
ONE CHAIN OF AUTHORITY.

Each artifact passes through the right hands. Tier I sets policy. Tier II owns workflows. Tier III executes. The 3Rs & Welfare Lead can veto anything, anywhere in the chain.

I
// TIER ONE

DIRECTORS

Strategic and compliance oversight. Final reviewers. Policy authority.

04 AGENTS
  • 3Rs & Welfare Lead Guardian of the 3Rs and animal welfare.
    VETO
  • Principal Investigator Director Scientific integrity. Hypothesis discipline. Pediatric relevance.
  • IACUC & Ethics Compliance Director Regulatory completeness. AAALAC, PHS, USDA, AVMA alignment.
  • Vivarium Operations Director Facility standards. ARC/ARCAC liaison. Allocation feasibility.
II
// TIER TWO

DEPARTMENT LEADS

Workflow ownership. Primary authors and reviewers within their domain.

07 AGENTS
  • Protocol Designer
  • Study Coordinator
  • Veterinary Welfare Specialist
  • Data & Biostatistics Lead
  • Sample & Histology Manager
  • Training & SOP Lead
  • Publication & Reporting Lead
III
// TIER THREE

SPECIALISTS

Task execution. Narrow scope. Deep focus. Report up to a Lead.

09 AGENTS
  • ·Animal Husbandry
  • ·Procedure & Surgery Planner
  • ·Environmental Monitoring
  • ·Endpoint Criteria Specialist
  • ·Data Collection & Blinding
  • ·Literature Review
  • ·Inventory & Supply
  • ·Statistics & Analysis
  • ·Report & Amendment Writer
04 //

THIRTY COMMANDS.
EIGHT FULLY IMPLEMENTED SKILLS.

Type slash. Pick a skill. The studio routes the request to the right agents and produces the artifact. Eight skills are fully implemented; twenty-two are scaffolded for first-use expansion.

DEEP — fully implemented STUB — scaffolded
A

CORE

  • /start
  • /team-review
  • /compliance-audit
  • /project-status
B

PROTOCOL & STUDY DESIGN

  • /study-design
  • /protocol-draft
  • /iacuc-draft
  • /3rs-review
  • /power-analysis
  • /humane-endpoint
  • /welfare-monitoring
  • /randomization-plan
  • /blinding-protocol
  • /endpoint-criteria
C

VIVARIUM & OPERATIONS

  • /vivarium-plan
  • /husbandry-sop
  • /enrichment-audit
  • /census-manage
  • /environmental-monitor
  • /supply-inventory
D

PROCEDURES & WELFARE

  • /surgery-checklist
  • /anesthesia-protocol
E

DATA & ANALYSIS

  • /data-dictionary
  • /stats-plan
  • /analysis-pipeline
  • /report-generate
  • /publication-draft
F

TRAINING & KNOWLEDGE

  • /socratic-explain
  • /sop-generate
  • /training-module
05 //

BUILT ON <INSTITUTION REDACTED>'S
INSTITUTIONAL REALITY.

// SUBSYSTEM 05.A

THE TWO-LIMIT ALLOCATION MODEL

Every in vivo study faces two independent ceilings. Operational capacity is the lesser of the two.

// effective concurrent capacity
capacity(species, PI) = min(
  protocol_authorized_count,
  arcac_allocated_cages × cage_density(species)
)
// SUBSYSTEM 05.B

VIVARIUM FACILITIES

Two operational. One under construction. ~30,000 cages active program-wide.

// OPERATIONAL

<Institutional Name Redacted>

<Facility Name Redacted> Research Tower

Rooms E####

// OPERATIONAL

<Institutional Name Redacted>

<Facility Name Redacted> Advanced Research Center

Rooms MA####

// UNDER CONSTRUCTION

FACILITY THREE

Designation pending

Pattern TBD

// SUBSYSTEM 05.C · SCALE ~30,000 CAGES PROGRAM-WIDE

Mouse-dominant census. Population proportional to a multi-PI, multi-program, AAALAC-accredited research operation.

// SUBSYSTEM 05.D · SPECIES
  • Mouse
  • Rat
  • Cotton rat
  • Ferret
  • Chicken
  • Duck
  • Swine
  • Minipossum
  • Frogs
  • Zebrafish
  • Rabbit
// SUBSYSTEM 05.E · DEPARTMENTS 62 VERSIONED ENTRIES

Stable internal IDs. Name-history registry. Renames don't break legacy data attribution.

06 //
— 01

NO REAL DATA.
NO REAL IDS.
EVER.

No animal IDs, ear-tag numbers, MRNs, PI names, or grant numbers in committed files. Placeholders only. Hooks warn at write-time.

— 02

THE STUDIO DRAFTS.
HUMANS APPROVE.

No autonomous action on live animals or live systems. The studio produces drafts and reviews; institutional submission is always a manual human action.

— 03

THE 3Rs & WELFARE LEAD
CAN VETO.

A welfare-substance veto from the 3Rs & Welfare Lead is binding. No other agent's approval can override it. Concerns are addressed; not bypassed.

07 //

THREE STEPS.
YOU'RE OPERATIONAL.

  1. 01
    CLONE

    Pull the studio

    $ git clone https://github.com/Vandevious/animal-research-ops-studio
  2. 02
    ENTER

    Open in Claude Code

    $ cd animal-research-ops-studio && claude
  3. 03
    BEGIN

    Type the entry command

    > /start